IL_5JCS_087
3D structure
- PDB id
- 5JCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GUGACGAAG*UCGAAC
- Length
- 15 nucleotides
- Bulged bases
- 5JCS|1|x|C|1391
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JCS_087 not in the Motif Atlas
- Geometric match to IL_6HCT_001
- Geometric discrepancy: 0.3536
- The information below is about IL_6HCT_001
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_64900.1
- Basepair signature
- cWW-cWW-tSS-tSH-L-tHS-R-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
5JCS|1|x|G|1387
5JCS|1|x|U|1388
5JCS|1|x|G|1389
5JCS|1|x|A|1390
5JCS|1|x|C|1391
5JCS|1|x|G|1392
5JCS|1|x|A|1393
5JCS|1|x|A|1394
5JCS|1|x|G|1395
*
5JCS|1|x|U|1415
5JCS|1|x|C|1416
5JCS|1|x|G|1417
5JCS|1|x|A|1418
5JCS|1|x|A|1419
5JCS|1|x|C|1420
Current chains
- Chain x
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain E
- 60S ribosomal protein L6-A
- Chain e
- 60S ribosomal protein L32
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: