IL_5JPQ_004

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

5JPQ|1|2|C|114

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JPQ_004 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.323

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5JPQ|1|2|U|113
5JPQ|1|2|C|114
5JPQ|1|2|G|115
5JPQ|1|2|U|116
*
5JPQ|1|2|A|300
5JPQ|1|2|A|301

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain p

eS4

Chain t

eS8

Chain y

uS17