IL_5JPQ_012

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

5JPQ|1|2|U|313, 5JPQ|1|2|C|351

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JPQ_012 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.3937

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

5JPQ|1|2|U|311
5JPQ|1|2|A|312
5JPQ|1|2|U|313
5JPQ|1|2|C|314
5JPQ|1|2|A|315
5JPQ|1|2|A|316
*
5JPQ|1|2|U|348
5JPQ|1|2|U|349
5JPQ|1|2|U|350
5JPQ|1|2|C|351
5JPQ|1|2|A|352
5JPQ|1|2|A|353
5JPQ|1|2|C|354
5JPQ|1|2|G|355

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain t

eS8

Chain y

uS17