IL_5JPQ_019

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

UAC*GUAA

Length

7 nucleotides

Bulged bases

5JPQ|1|2|A|505

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JPQ_019 not in the Motif Atlas

Geometric match to IL_5E81_371

Geometric discrepancy: 0.2402

The information below is about IL_5E81_371

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

5JPQ|1|2|U|482
5JPQ|1|2|A|483
5JPQ|1|2|C|484
*
5JPQ|1|2|G|503
5JPQ|1|2|U|504
5JPQ|1|2|A|505
5JPQ|1|2|A|506

Current chains

Chain 2

18S ribosomal RNA

Nearby chains