IL_5JPQ_028

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JPQ_028 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.3867

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5JPQ|1|2|G|885
5JPQ|1|2|U|886
5JPQ|1|2|A|887
5JPQ|1|2|U|888
*
5JPQ|1|2|A|924
5JPQ|1|2|G|925
5JPQ|1|2|A|926
5JPQ|1|2|C|927

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain g

KRR1 small subunit processome component

Chain o

eS1

Chain w

uS11