IL_5JPQ_044

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JPQ_044 not in the Motif Atlas

Homologous match to IL_8P9A_407

Geometric discrepancy: 0.2992

The information below is about IL_8P9A_407

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5JPQ|1|2|C|627
5JPQ|1|2|G|628
5JPQ|1|2|U|629
5JPQ|1|2|A|630
5JPQ|1|2|G|631
*
5JPQ|1|2|U|968
5JPQ|1|2|C|969
5JPQ|1|2|A|970
5JPQ|1|2|A|971
5JPQ|1|2|G|972

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain v

uS15

Chain z

uS8