IL_5JTE_133

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5JTE|1|BA|A|1801, 5JTE|1|BA|C|1816, 5JTE|1|BA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JTE_133 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0863

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5JTE|1|BA|U|1798
5JTE|1|BA|G|1799
5JTE|1|BA|C|1800
5JTE|1|BA|A|1801
5JTE|1|BA|A|1802
5JTE|1|BA|A|1803
5JTE|1|BA|C|1804
*
5JTE|1|BA|G|1813
5JTE|1|BA|G|1814
5JTE|1|BA|A|1815
5JTE|1|BA|C|1816
5JTE|1|BA|G|1817
5JTE|1|BA|U|1818
5JTE|1|BA|A|1819
5JTE|1|BA|U|1820
5JTE|1|BA|A|1821

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2