IL_5JU8_025
3D structure
- PDB id
- 5JU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5JU8|1|AA|A|532, 5JU8|1|AA|U|534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JU8_025 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.136
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5JU8|1|AA|G|515
5JU8|1|AA|U|516
5JU8|1|AA|G|517
5JU8|1|AA|C|518
5JU8|1|AA|C|519
5JU8|1|AA|A|520
5JU8|1|AA|G|521
*
5JU8|1|AA|C|528
5JU8|1|AA|G|529
5JU8|1|AA|G|530
5JU8|1|AA|U|531
5JU8|1|AA|A|532
5JU8|1|AA|A|533
5JU8|1|AA|U|534
5JU8|1|AA|A|535
5JU8|1|AA|C|536
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AC
- 30S ribosomal protein S3
- Chain AD
- 30S ribosomal protein S4
- Chain AL
- 30S ribosomal protein S12
- Chain AV
- mRNA
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