IL_5JU8_054

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

5JU8|1|AA|A|1257, 5JU8|1|AA|A|1280, 5JU8|1|AA|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_054 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.1554

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

5JU8|1|AA|G|1255
5JU8|1|AA|A|1256
5JU8|1|AA|A|1257
5JU8|1|AA|G|1258
*
5JU8|1|AA|C|1277
5JU8|1|AA|G|1278
5JU8|1|AA|G|1279
5JU8|1|AA|A|1280
5JU8|1|AA|C|1281
5JU8|1|AA|C|1282

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14