IL_5JU8_134

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5JU8|1|BA|A|1801, 5JU8|1|BA|C|1816, 5JU8|1|BA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JU8_134 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0844

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5JU8|1|BA|U|1798
5JU8|1|BA|G|1799
5JU8|1|BA|C|1800
5JU8|1|BA|A|1801
5JU8|1|BA|A|1802
5JU8|1|BA|A|1803
5JU8|1|BA|C|1804
*
5JU8|1|BA|G|1813
5JU8|1|BA|G|1814
5JU8|1|BA|A|1815
5JU8|1|BA|C|1816
5JU8|1|BA|G|1817
5JU8|1|BA|U|1818
5JU8|1|BA|A|1819
5JU8|1|BA|U|1820
5JU8|1|BA|A|1821

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2