IL_5JUO_040
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUO_040 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.4304
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5JUO|1|A|G|751
5JUO|1|A|A|752
5JUO|1|A|A|753
5JUO|1|A|A|754
5JUO|1|A|A|755
5JUO|1|A|A|756
5JUO|1|A|A|757
5JUO|1|A|U|758
5JUO|1|A|U|759
*
5JUO|1|A|A|791
5JUO|1|A|U|792
5JUO|1|A|A|793
5JUO|1|A|U|794
5JUO|1|A|U|795
5JUO|1|A|A|796
5JUO|1|A|G|797
5JUO|1|A|C|798
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain BB
- eS4 (yeast S4)
- Chain GB
- uS4 (yeast S9)
- Chain IB
- uS17 (yeast S11)
- Chain TB
- uS8 (yeast S22)
Coloring options: