IL_5JUO_043
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGU*GAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUO_043 not in the Motif Atlas
- Geometric match to IL_4V88_448
- Geometric discrepancy: 0.3743
- The information below is about IL_4V88_448
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30342.2
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
5JUO|1|A|G|871
5JUO|1|A|G|872
5JUO|1|A|U|873
*
5JUO|1|A|G|954
5JUO|1|A|A|955
5JUO|1|A|C|956
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain HA
- eL30 (yeast L30)
- Chain KB
- uS15 (yeast S13)
- Chain YA
- eS1 (yeast S1)
- Chain YB
- eS27 (yeast S27)
Coloring options: