IL_5JUO_059
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 5JUO|1|A|G|1228
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUO_059 not in the Motif Atlas
- Homologous match to IL_4V88_447
- Geometric discrepancy: 0.5115
- The information below is about IL_4V88_447
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_34780.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5JUO|1|A|A|1224
5JUO|1|A|U|1225
5JUO|1|A|A|1226
5JUO|1|A|A|1227
5JUO|1|A|G|1228
5JUO|1|A|G|1229
5JUO|1|A|A|1230
5JUO|1|A|U|1231
5JUO|1|A|U|1232
5JUO|1|A|G|1233
*
5JUO|1|A|C|1252
5JUO|1|A|U|1253
5JUO|1|A|U|1254
5JUO|1|A|G|1255
5JUO|1|A|A|1256
5JUO|1|A|U|1257
5JUO|1|A|U|1258
5JUO|1|A|U|1259
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AC
- uS14 (yeast S29)
- Chain CC
- eS31 (yeast S31)
- Chain HB
- eS10 (yeast S10)
- Chain JB
- eS12 (yeast S12)
Coloring options: