IL_5JUO_075

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5JUO|1|A|C|1637, 5JUO|1|A|A|1766

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUO_075 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.162

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5JUO|1|A|C|1636
5JUO|1|A|C|1637
5JUO|1|A|G|1638
*
5JUO|1|A|C|1764
5JUO|1|A|A|1765
5JUO|1|A|A|1766
5JUO|1|A|G|1767

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain EC

IRES

Chain SA

eL41 (yeast L41)

Chain XB

eS26 (yeast S26)