IL_5JUO_085

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUCA*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUO_085 not in the Motif Atlas

Geometric match to IL_4UYK_003

Geometric discrepancy: 0.2185

The information below is about IL_4UYK_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

5JUO|1|A|C|1675
5JUO|1|A|U|1676
5JUO|1|A|C|1677
5JUO|1|A|A|1678
*
5JUO|1|A|U|1723
5JUO|1|A|U|1724
5JUO|1|A|U|1725
5JUO|1|A|G|1726

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain BA

eL24 (yeast L24)

Chain DB

eS6 (yeast S6)

Chain FB

eS8 (yeast S8)