IL_5JUO_097
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GAGAC*GUUC
- Length
- 9 nucleotides
- Bulged bases
- 5JUO|1|B|A|338
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUO_097 not in the Motif Atlas
- Geometric match to IL_7A0S_040
- Geometric discrepancy: 0.3512
- The information below is about IL_7A0S_040
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_77658.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
5JUO|1|B|G|335
5JUO|1|B|A|336
5JUO|1|B|G|337
5JUO|1|B|A|338
5JUO|1|B|C|339
*
5JUO|1|C|G|25
5JUO|1|C|U|26
5JUO|1|C|U|27
5JUO|1|C|C|28
Current chains
- Chain B
- 25S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain DA
- uL24 (yeast L26)
- Chain H
- uL4 (yeast L4)
- Chain Q
- eL13 (yeast L13)
Coloring options: