IL_5JUO_117
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 5JUO|1|B|G|908, 5JUO|1|B|A|920, 5JUO|1|B|A|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUO_117 not in the Motif Atlas
- Homologous match to IL_8C3A_036
- Geometric discrepancy: 0.1644
- The information below is about IL_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5JUO|1|B|G|907
5JUO|1|B|G|908
5JUO|1|B|G|909
*
5JUO|1|B|U|919
5JUO|1|B|A|920
5JUO|1|B|A|921
5JUO|1|B|U|922
5JUO|1|B|C|923
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain F
- uL2 (yeast L2)
- Chain OA
- eL37 (yeast L37)
- Chain S
- eL15 (yeast L15)
- Chain U
- uL22 (yeast L17)
Coloring options: