IL_5JUO_152
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UUAAC*GGAAGA
- Length
- 11 nucleotides
- Bulged bases
- 5JUO|1|B|G|1751
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUO_152 not in the Motif Atlas
- Homologous match to IL_8C3A_077
- Geometric discrepancy: 0.2674
- The information below is about IL_8C3A_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69313.1
- Basepair signature
- cWW-tWH-tHH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUO|1|B|U|1694
5JUO|1|B|U|1695
5JUO|1|B|A|1696
5JUO|1|B|A|1697
5JUO|1|B|C|1698
*
5JUO|1|B|G|1747
5JUO|1|B|G|1748
5JUO|1|B|A|1749
5JUO|1|B|A|1750
5JUO|1|B|G|1751
5JUO|1|B|A|1752
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain LA
- eL34 (yeast L34)
- Chain PA
- eL38 (yeast L38)
Coloring options: