IL_5JUO_153

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUO_153 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.3417

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5JUO|1|B|U|1702
5JUO|1|B|U|1703
5JUO|1|B|A|1704
5JUO|1|B|U|1705
5JUO|1|B|C|1706
5JUO|1|B|A|1707
*
5JUO|1|B|U|1737
5JUO|1|B|C|1738
5JUO|1|B|U|1739
5JUO|1|B|U|1740
5JUO|1|B|A|1741
5JUO|1|B|U|1742
5JUO|1|B|G|1743

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain LA

eL34 (yeast L34)