IL_5JUO_168

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUO_168 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.2392

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5JUO|1|B|U|2211
5JUO|1|B|C|2212
5JUO|1|B|A|2213
5JUO|1|B|A|2214
5JUO|1|B|A|2215
5JUO|1|B|G|2216
5JUO|1|B|U|2217
*
5JUO|1|B|A|2228
5JUO|1|B|A|2229
5JUO|1|B|C|2230
5JUO|1|B|C|2231
5JUO|1|B|A|2232
5JUO|1|B|A|2233
5JUO|1|B|G|2234

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain EC

IRES

Chain NA

eL36 (yeast L36)