IL_5JUO_170

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

5JUO|1|B|A|2281, 5JUO|1|B|C|2287, 5JUO|1|B|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUO_170 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.2649

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5JUO|1|B|C|2277
5JUO|1|B|C|2278
5JUO|1|B|A|2279
5JUO|1|B|A|2280
5JUO|1|B|A|2281
5JUO|1|B|U|2282
5JUO|1|B|G|2283
5JUO|1|B|C|2284
5JUO|1|B|C|2285
5JUO|1|B|U|2286
5JUO|1|B|C|2287
5JUO|1|B|G|2288
*
5JUO|1|B|C|2304
5JUO|1|B|G|2305
5JUO|1|B|C|2306
5JUO|1|B|G|2307

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain SA

eL41 (yeast L41)