IL_5JUO_222
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 5JUO|1|D|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUO_222 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.1841
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5JUO|1|D|A|72
5JUO|1|D|C|73
5JUO|1|D|C|74
5JUO|1|D|G|75
5JUO|1|D|A|76
5JUO|1|D|G|77
5JUO|1|D|U|78
5JUO|1|D|A|79
5JUO|1|D|G|80
*
5JUO|1|D|C|100
5JUO|1|D|G|101
5JUO|1|D|A|102
5JUO|1|D|A|103
5JUO|1|D|A|104
5JUO|1|D|C|105
5JUO|1|D|U|106
Current chains
- Chain D
- 5S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- uL30 (yeast L7)
- Chain N
- uL16 (yeast L10)
- Chain X
- eL20 (yeast L20)
- Chain Y
- eL21 (yeast L21)
Coloring options: