IL_5JUO_229
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUAUU*AAGAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUO_229 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.3561
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
5JUO|1|A|G|885
5JUO|1|A|U|886
5JUO|1|A|A|887
5JUO|1|A|U|888
5JUO|1|A|U|889
*
5JUO|1|A|A|923
5JUO|1|A|A|924
5JUO|1|A|G|925
5JUO|1|A|A|926
5JUO|1|A|C|927
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- uL2 (yeast L2)
- Chain LB
- uS11 (yeast S14)
- Chain UA
- eL43 (yeast L43)
- Chain XB
- eS26 (yeast S26)
- Chain YA
- eS1 (yeast S1)
Coloring options: