IL_5JUO_233

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUO_233 not in the Motif Atlas

Homologous match to IL_8C3A_454

Geometric discrepancy: 0.4587

The information below is about IL_8C3A_454

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

5JUO|1|A|A|1234
5JUO|1|A|C|1235
5JUO|1|A|A|1236
*
5JUO|1|A|U|1249
5JUO|1|A|U|1250
5JUO|1|A|U|1251

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AC

uS14 (yeast S29)

Chain CC

eS31 (yeast S31)

Chain MB

uS19 (yeast S15)