IL_5JUO_242

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGAAG*UGGAGGC

Length

13 nucleotides

Bulged bases

5JUO|1|B|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUO_242 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.3143

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5JUO|1|B|G|833
5JUO|1|B|U|834
5JUO|1|B|G|835
5JUO|1|B|A|836
5JUO|1|B|A|837
5JUO|1|B|G|838
*
5JUO|1|B|U|855
5JUO|1|B|G|856
5JUO|1|B|G|857
5JUO|1|B|A|858
5JUO|1|B|G|859
5JUO|1|B|G|860
5JUO|1|B|C|861

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain F

uL2 (yeast L2)

Chain UA

eL43 (yeast L43)

Chain W

eL19 (yeast L19)