IL_5JUO_261
3D structure
- PDB id
- 5JUO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UUUUUG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 5JUO|1|B|U|3056, 5JUO|1|B|U|3058
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUO_261 not in the Motif Atlas
- Homologous match to IL_8CRE_127
- Geometric discrepancy: 0.4472
- The information below is about IL_8CRE_127
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_21001.1
- Basepair signature
- cWW-L-R-tHW-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
5JUO|1|B|U|3054
5JUO|1|B|U|3055
5JUO|1|B|U|3056
5JUO|1|B|U|3057
5JUO|1|B|U|3058
5JUO|1|B|G|3059
*
5JUO|1|B|C|3084
5JUO|1|B|G|3085
5JUO|1|B|A|3086
5JUO|1|B|A|3087
5JUO|1|B|G|3088
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain BA
- eL24 (yeast L24)
- Chain G
- uL3 (yeast L3)
- Chain IA
- eL31 (yeast L31)
Coloring options: