IL_5JUP_018

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCC*GUGC

Length

7 nucleotides

Bulged bases

5JUP|1|A|U|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUP_018 not in the Motif Atlas

Geometric match to IL_4V83_235

Geometric discrepancy: 0.2448

The information below is about IL_4V83_235

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5JUP|1|A|G|274
5JUP|1|A|C|275
5JUP|1|A|C|276
*
5JUP|1|A|G|279
5JUP|1|A|U|280
5JUP|1|A|G|281
5JUP|1|A|C|282

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain DB

eS6 (yeast S6)