IL_5JUP_030
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUP_030 not in the Motif Atlas
- Homologous match to IL_4V88_413
- Geometric discrepancy: 0.1181
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
5JUP|1|A|A|550
5JUP|1|A|G|551
5JUP|1|A|G|552
5JUP|1|A|G|553
5JUP|1|A|C|554
5JUP|1|A|A|555
5JUP|1|A|A|556
5JUP|1|A|G|557
*
5JUP|1|A|C|587
5JUP|1|A|U|588
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain BC
- eS30 (yeast S30)
- Chain GB
- uS4 (yeast S9)
- Chain ZA
- uS5 (yeast S2)
Coloring options: