IL_5JUP_088
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AAAUC*GUUU
- Length
- 9 nucleotides
- Bulged bases
- 5JUP|1|B|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUP_088 not in the Motif Atlas
- Geometric match to IL_4K27_001
- Geometric discrepancy: 0.2526
- The information below is about IL_4K27_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
5JUP|1|B|A|11
5JUP|1|B|A|12
5JUP|1|B|A|13
5JUP|1|B|U|14
5JUP|1|B|C|15
*
5JUP|1|C|G|144
5JUP|1|C|U|145
5JUP|1|C|U|146
5JUP|1|C|U|147
Current chains
- Chain B
- 25S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain CA
- uL23 (yeast L25)
- Chain L
- eL8 (yeast L8)
- Chain S
- eL15 (yeast L15)
Coloring options: