IL_5JUP_121

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

5JUP|1|B|U|979, 5JUP|1|B|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUP_121 not in the Motif Atlas

Homologous match to IL_5TBW_036

Geometric discrepancy: 0.5867

The information below is about IL_5TBW_036

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_42230.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

5JUP|1|B|C|977
5JUP|1|B|G|978
5JUP|1|B|U|979
5JUP|1|B|A|980
5JUP|1|B|U|981
*
5JUP|1|B|A|1102
5JUP|1|B|A|1103
5JUP|1|B|G|1104

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain GA

eL29 (yeast L29)

Chain K

uL30 (yeast L7)

Chain V

eL18 (yeast L18)