IL_5JUP_162
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 5JUP|1|B|G|2335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUP_162 not in the Motif Atlas
- Homologous match to IL_8C3A_083
- Geometric discrepancy: 0.11
- The information below is about IL_8C3A_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06455.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
5JUP|1|B|A|1901
5JUP|1|B|G|1902
5JUP|1|B|U|1903
5JUP|1|B|C|1904
5JUP|1|B|G|1905
5JUP|1|B|G|1906
*
5JUP|1|B|C|2333
5JUP|1|B|U|2334
5JUP|1|B|G|2335
5JUP|1|B|U|2336
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain AA
- uL14 (yeast L23)
- Chain G
- uL3 (yeast L3)
Coloring options: