IL_5JUP_170
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAUGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 5JUP|1|B|U|2159, 5JUP|1|B|U|2175, 5JUP|1|B|C|2179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUP_170 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.0884
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUP|1|B|C|2156
5JUP|1|B|G|2157
5JUP|1|B|A|2158
5JUP|1|B|U|2159
5JUP|1|B|G|2160
5JUP|1|B|G|2161
*
5JUP|1|B|U|2173
5JUP|1|B|G|2174
5JUP|1|B|U|2175
5JUP|1|B|U|2176
5JUP|1|B|G|2177
5JUP|1|B|A|2178
5JUP|1|B|C|2179
5JUP|1|B|G|2180
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain F
- uL2 (yeast L2)
- Chain UA
- eL43 (yeast L43)
Coloring options: