IL_5JUP_209
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 5JUP|1|B|A|3180, 5JUP|1|B|A|3186, 5JUP|1|B|U|3207, 5JUP|1|B|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUP_209 not in the Motif Atlas
- Homologous match to IL_5TBW_124
- Geometric discrepancy: 0.1168
- The information below is about IL_5TBW_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5JUP|1|B|U|3179
5JUP|1|B|A|3180
5JUP|1|B|C|3181
5JUP|1|B|G|3182
5JUP|1|B|A|3183
5JUP|1|B|A|3184
5JUP|1|B|U|3185
5JUP|1|B|A|3186
5JUP|1|B|A|3187
5JUP|1|B|G|3188
*
5JUP|1|B|C|3204
5JUP|1|B|G|3205
5JUP|1|B|C|3206
5JUP|1|B|U|3207
5JUP|1|B|G|3208
5JUP|1|B|A|3209
5JUP|1|B|A|3210
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain J
- eL6 (yeast L6)
- Chain KA
- eL33 (yeast L33)
- Chain M
- uL6 (yeast L9)
- Chain R
- eL14 (yeast L14)
- Chain T
- uL13 (yeast L16)
- Chain X
- eL20 (yeast L20)
Coloring options: