IL_5JUP_221

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

5JUP|1|B|U|3354, 5JUP|1|B|U|3355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUP_221 not in the Motif Atlas

Homologous match to IL_8C3A_142

Geometric discrepancy: 0.2869

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5JUP|1|B|C|3349
5JUP|1|B|C|3350
*
5JUP|1|B|G|3353
5JUP|1|B|U|3354
5JUP|1|B|U|3355
5JUP|1|B|G|3356

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain FB

eS8 (yeast S8)

Chain Z

eL22 (yeast L22)