IL_5JUP_222
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUP_222 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.1053
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
5JUP|1|C|A|44
5JUP|1|C|C|45
5JUP|1|C|G|46
5JUP|1|C|C|47
5JUP|1|C|A|48
5JUP|1|C|G|49
5JUP|1|C|C|50
5JUP|1|C|G|51
5JUP|1|C|A|52
5JUP|1|C|A|53
5JUP|1|C|A|54
5JUP|1|C|U|55
5JUP|1|C|G|56
5JUP|1|C|C|57
5JUP|1|C|G|58
5JUP|1|C|A|59
5JUP|1|C|U|60
5JUP|1|C|A|61
5JUP|1|C|C|62
5JUP|1|C|G|63
5JUP|1|C|U|64
*
5JUP|1|C|A|96
5JUP|1|C|A|97
5JUP|1|C|U|98
5JUP|1|C|C|99
5JUP|1|C|U|100
Current chains
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain CA
- uL23 (yeast L25)
- Chain MA
- uL29 (yeast L35)
- Chain OA
- eL37 (yeast L37)
- Chain QA
- eL39 (yeast L39)
Coloring options: