IL_5JUP_248

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAC*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUP_248 not in the Motif Atlas

Geometric match to IL_8C3A_109

Geometric discrepancy: 0.3171

The information below is about IL_8C3A_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5JUP|1|B|U|4
5JUP|1|B|G|5
5JUP|1|B|A|6
5JUP|1|B|C|7
*
5JUP|1|C|G|152
5JUP|1|C|U|153
5JUP|1|C|C|154
5JUP|1|C|A|155

Current chains

Chain B

25S ribosomal RNA

Chain C

5.8S ribosomal RNA

Nearby chains

Chain CA

uL23 (yeast L25)

Chain L

eL8 (yeast L8)