IL_5JUP_252

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

5JUP|1|B|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUP_252 not in the Motif Atlas

Homologous match to IL_8P9A_290

Geometric discrepancy: 0.1369

The information below is about IL_8P9A_290

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

5JUP|1|B|U|1501
5JUP|1|B|C|1502
5JUP|1|B|A|1503
5JUP|1|B|A|1504
5JUP|1|B|C|1505
*
5JUP|1|B|G|1513
5JUP|1|B|G|1514
5JUP|1|B|A|1515

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain QA

eL39 (yeast L39)

Chain U

uL22 (yeast L17)

Chain W

eL19 (yeast L19)