IL_5JUS_022

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_022 not in the Motif Atlas

Homologous match to IL_4V88_406

Geometric discrepancy: 0.2623

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

5JUS|1|A|C|411
5JUS|1|A|A|412
5JUS|1|A|U|413
*
5JUS|1|A|A|420
5JUS|1|A|A|421
5JUS|1|A|G|422

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AA

uL14 (yeast L23)

Chain DB

eS6 (yeast S6)

Chain DC

yeast eEF2