IL_5JUS_045
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 5JUS|1|A|C|1096, 5JUS|1|A|U|1098, 5JUS|1|A|G|1100
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_045 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1984
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUS|1|A|C|1034
5JUS|1|A|G|1035
5JUS|1|A|A|1036
*
5JUS|1|A|U|1095
5JUS|1|A|C|1096
5JUS|1|A|U|1097
5JUS|1|A|U|1098
5JUS|1|A|U|1099
5JUS|1|A|G|1100
5JUS|1|A|G|1101
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain IB
- uS17 (yeast S11)
- Chain KB
- uS15 (yeast S13)
- Chain SB
- eS21 (yeast S21)
- Chain TB
- uS8 (yeast S22)
- Chain UB
- uS12 (yeast S23)
- Chain ZA
- uS5 (yeast S2)
Coloring options: