IL_5JUS_046

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGAU*GCAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_046 not in the Motif Atlas

Homologous match to IL_4V88_438

Geometric discrepancy: 0.3334

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5JUS|1|A|G|1041
5JUS|1|A|G|1042
5JUS|1|A|A|1043
5JUS|1|A|U|1044
*
5JUS|1|A|G|1074
5JUS|1|A|C|1075
5JUS|1|A|A|1076
5JUS|1|A|C|1077

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain KB

uS15 (yeast S13)

Chain XA

uS2 (yeast S0)

Chain XB

eS26 (yeast S26)

Chain YA

eS1 (yeast S1)

Chain YB

eS27 (yeast S27)