IL_5JUS_048
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_048 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.1872
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5JUS|1|A|G|1111
5JUS|1|A|G|1112
5JUS|1|A|A|1113
5JUS|1|A|G|1114
5JUS|1|A|U|1115
5JUS|1|A|A|1116
5JUS|1|A|U|1117
5JUS|1|A|G|1118
*
5JUS|1|A|U|1129
5JUS|1|A|G|1130
5JUS|1|A|A|1131
5JUS|1|A|A|1132
5JUS|1|A|A|1133
5JUS|1|A|C|1134
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain SA
- eL41 (yeast L41)
- Chain UB
- uS12 (yeast S23)
Coloring options: