IL_5JUS_062
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UGG*CGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_062 not in the Motif Atlas
- Homologous match to IL_4V88_453
- Geometric discrepancy: 0.2944
- The information below is about IL_4V88_453
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.1
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 48
Unit IDs
5JUS|1|A|U|1290
5JUS|1|A|G|1291
5JUS|1|A|G|1292
*
5JUS|1|A|C|1323
5JUS|1|A|G|1324
5JUS|1|A|A|1325
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AB
- uS3 (yeast S3)
- Chain OB
- eS17 (yeast S17)
- Chain XA
- uS2 (yeast S0)
- Chain ZA
- uS5 (yeast S2)
Coloring options: