IL_5JUS_065

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

5JUS|1|A|A|1346, 5JUS|1|A|U|1347

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_065 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.2107

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

5JUS|1|A|A|1345
5JUS|1|A|A|1346
5JUS|1|A|U|1347
5JUS|1|A|A|1348
*
5JUS|1|A|U|1377
5JUS|1|A|U|1378
5JUS|1|A|C|1379
5JUS|1|A|U|1380

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain NB

uS9 (yeast S16)

Chain RB

uS10 (yeast S20)

Chain WA

RACK1 (yeast Asc1)