IL_5JUS_068
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_068 not in the Motif Atlas
- Homologous match to IL_4V88_459
- Geometric discrepancy: 0.3052
- The information below is about IL_4V88_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10447.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUS|1|A|G|1480
5JUS|1|A|C|1481
5JUS|1|A|C|1482
5JUS|1|A|A|1483
5JUS|1|A|G|1484
5JUS|1|A|C|1485
5JUS|1|A|G|1486
5JUS|1|A|A|1487
*
5JUS|1|A|U|1519
5JUS|1|A|U|1520
5JUS|1|A|G|1521
5JUS|1|A|U|1522
5JUS|1|A|G|1523
5JUS|1|A|A|1524
5JUS|1|A|A|1525
5JUS|1|A|A|1526
5JUS|1|A|C|1527
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AB
- uS3 (yeast S3)
- Chain AC
- uS14 (yeast S29)
- Chain CB
- uS7 (yeast S5)
- Chain NB
- uS9 (yeast S16)
- Chain QB
- eS19 (yeast S19)
- Chain RB
- uS10 (yeast S20)
Coloring options: