IL_5JUS_142
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUAGUAGC*GCGAAAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_142 not in the Motif Atlas
- Geometric match to IL_4V9F_012
- Geometric discrepancy: 0.3156
- The information below is about IL_4V9F_012
- Detailed Annotation
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_59724.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
5JUS|1|B|G|1444
5JUS|1|B|U|1445
5JUS|1|B|A|1446
5JUS|1|B|G|1447
5JUS|1|B|U|1448
5JUS|1|B|A|1449
5JUS|1|B|G|1450
5JUS|1|B|C|1451
*
5JUS|1|B|G|2353
5JUS|1|B|C|2354
5JUS|1|B|G|2355
5JUS|1|B|A|2356
5JUS|1|B|A|2357
5JUS|1|B|A|2358
5JUS|1|B|C|2359
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain H
- uL4 (yeast L4)
- Chain U
- uL22 (yeast L17)
Coloring options: