IL_5JUS_146

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_146 not in the Motif Atlas

Geometric match to IL_6JXM_001

Geometric discrepancy: 0.2717

The information below is about IL_6JXM_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

5JUS|1|B|C|1597
5JUS|1|B|G|1598
*
5JUS|1|B|C|1609
5JUS|1|B|G|1610
5JUS|1|B|G|1611

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain CA

uL23 (yeast L25)

Chain LA

eL34 (yeast L34)

Chain PA

eL38 (yeast L38)