IL_5JUS_149

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

5JUS|1|B|U|1629

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_149 not in the Motif Atlas

Homologous match to IL_5TBW_066

Geometric discrepancy: 0.2794

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5JUS|1|B|U|1627
5JUS|1|B|C|1628
5JUS|1|B|U|1629
5JUS|1|B|U|1630
5JUS|1|B|C|1631
*
5JUS|1|B|G|1811
5JUS|1|B|G|1812
5JUS|1|B|A|1813
5JUS|1|B|A|1814
5JUS|1|B|U|1815
5JUS|1|B|A|1816

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain EA

eL27 (yeast L27)