IL_5JUS_153

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_153 not in the Motif Atlas

Geometric match to IL_5J7L_249

Geometric discrepancy: 0.1668

The information below is about IL_5J7L_249

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

5JUS|1|B|C|1670
5JUS|1|B|C|1671
*
5JUS|1|B|G|1776
5JUS|1|B|U|1777
5JUS|1|B|G|1778

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain LA

eL34 (yeast L34)

Chain W

eL19 (yeast L19)