IL_5JUS_154

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_154 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.3775

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

5JUS|1|B|U|1694
5JUS|1|B|U|1695
5JUS|1|B|A|1696
5JUS|1|B|A|1697
5JUS|1|B|C|1698
*
5JUS|1|B|G|1747
5JUS|1|B|G|1748
5JUS|1|B|A|1749
5JUS|1|B|A|1750
5JUS|1|B|G|1751
5JUS|1|B|A|1752

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain LA

eL34 (yeast L34)

Chain PA

eL38 (yeast L38)