IL_5JUS_170
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_170 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.1897
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5JUS|1|B|U|2211
5JUS|1|B|C|2212
5JUS|1|B|A|2213
5JUS|1|B|A|2214
5JUS|1|B|A|2215
5JUS|1|B|G|2216
5JUS|1|B|U|2217
*
5JUS|1|B|A|2228
5JUS|1|B|A|2229
5JUS|1|B|C|2230
5JUS|1|B|C|2231
5JUS|1|B|A|2232
5JUS|1|B|A|2233
5JUS|1|B|G|2234
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain NA
- eL36 (yeast L36)
- Chain TA
- eL42 (yeast L42)
Coloring options: